Pyrad
Revision as of 18:36, 7 July 2017 by Moskalenko (talk | contribs)
Description
pyRAD - Assembly and analysis of RADseq data sets.
The benefit of pyRAD over most alternative methods for analyzing RADseq-like data comes in its use of an alignment-clustering method (vsearch) that allows for the inclusion of indel variation which improves identification of homology across highly divergent samples. For this reason pyRAD is commonly employed for RADseq studies at deeper phylogenetic scales, however, it works equally well at shallow scales.
Required Modules
Serial
- pyrad
System Variables
- HPC_{{#uppercase:pyrad}}_DIR - installation directory
