Proteinortho

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Revision as of 02:03, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==")
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Description

proteinortho website  

Computation of genome-wide orthology data.

The program Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic.

Available versions

  • 4.26

Execution Environment and Modules

To use proteinortho with the environment modules system at HPC the following commands are available:

Get module information for proteinortho:

$module spider proteinortho

Load the default application module:

$module load proteinortho

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_PROTEINORTHO_DIR - directory where proteinortho is located.