Difference between revisions of "Proovread"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) |
|||
| (4 intermediate revisions by 4 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|Proovread}} | |{{#vardefine:app|Proovread}} | ||
| Line 10: | Line 10: | ||
|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
|} | |} | ||
| Line 20: | Line 20: | ||
Large scale high-accuracy BioPac correction through iterative short read consensus. | Large scale high-accuracy BioPac correction through iterative short read consensus. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | < | ||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_CONF |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
| Line 55: | Line 52: | ||
<!--Citation--> | <!--Citation--> | ||
{{#if: {{#var: citation}}|==Citation== | {{#if: {{#var: citation}}|==Citation== | ||
| − | + | ||
| − | + | proovread: large-scale high accuracy PacBio correction through iterative short read consensus. Hackl, T.; Hedrich, R.; Schultz, J.; Förster, F. (2014). | |
| + | |||
|}} | |}} | ||
<!--Installation--> | <!--Installation--> | ||
Latest revision as of 20:27, 12 August 2022
Description
Large scale high-accuracy BioPac correction through iterative short read consensus.
Environment Modules
Run module spider Proovread to find out what environment modules are available for this application.
System Variables
- HPC_PROOVREAD_DIR - installation directory
- HPC_PROOVREAD_BIN
- HPC_PROOVREAD_CONF
Additional Information
For advanced usage copy the configuration file from $HPC_PROOVREAD_CONF to your working directory and adjust as needed for the analysis at hand.
Citation
proovread: large-scale high accuracy PacBio correction through iterative short read consensus. Hackl, T.; Hedrich, R.; Schultz, J.; Förster, F. (2014).