Difference between revisions of "Proovread"

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|{{#vardefine:testing|}}      <!--PROFILING-->
 
|{{#vardefine:testing|}}      <!--PROFILING-->
 
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-->
 
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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
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* HPC_{{uc:{{#var:app}}}}_DIR
* HPC_{{#uppercase:{{#var:app}}}}_BIN
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* HPC_{{uc:{{#var:app}}}}_BIN
* HPC_{{#uppercase:{{#var:app}}}}_CONF
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* HPC_{{uc:{{#var:app}}}}_CONF
 
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<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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<!--Citation-->
 
<!--Citation-->
 
{{#if: {{#var: citation}}|==Citation==
 
{{#if: {{#var: citation}}|==Citation==
If you publish research that uses {{#var:app}} you have to cite it as follows:
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WRITE_CITATION_HERE
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proovread: large-scale high accuracy PacBio correction through iterative short read consensus. Hackl, T.; Hedrich, R.; Schultz, J.; Förster, F. (2014).
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__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
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=Validation=
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* Validated 4/5/2018

Revision as of 21:22, 6 December 2019

Description

Proovread website  

Large scale high-accuracy BioPac correction through iterative short read consensus.

Required Modules

Serial

  • Proovread

System Variables

  • HPC_PROOVREAD_DIR
  • HPC_PROOVREAD_BIN
  • HPC_PROOVREAD_CONF

Additional Information

For advanced usage copy the configuration file from $HPC_PROOVREAD_CONF to your working directory and adjust as needed for the analysis at hand.



Citation

proovread: large-scale high accuracy PacBio correction through iterative short read consensus. Hackl, T.; Hedrich, R.; Schultz, J.; Förster, F. (2014).


Validation

  • Validated 4/5/2018