Difference between revisions of "Popcorn"

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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|popcorn}} |{{#vardefine:url|https://github.com/brielin/Popcorn}} <!--CONFIGURATION: OPTIONAL (|1}} mea...")
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{{#if: {{#var: job}}1|==Usage Examples==
{{#if: {{#var: job}}1|==Usage Examples==
<code>$ python popcorn compute --bfile /apps/popcorn/20211104/test/EAS_ref EAS.cscore</code>
<code>$ python /apps/popcorn/20211104/lib/popcorn/__main__.py compute --bfile /path/to/input/EAS_ref EAS.cscore</code>
<code>$ python /apps/popcorn/20211104/lib/popcorn/__main__.py compute --bfile /apps/popcorn/20211104/test/EAS_ref EAS.cscore</code>

Revision as of 22:20, 8 March 2022


popcorn website  

Popcorn is a program for estimaing the correlation of causal variant effect sizes across populations in GWAS.

Environment Modules

Run module spider popcorn to find out what environment modules are available for this application.

System Variables

  • HPC_POPCORN_DIR - installation directory
  • HPC_POPCORN_BIN - executable directory

Usage Examples

$ python /apps/popcorn/20211104/lib/popcorn/__main__.py compute --bfile /path/to/input/EAS_ref EAS.cscore