Difference between revisions of "Plinkseq"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Library {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|plinkseq}} |{{#vardefine:url|http://atgu.mgh.harvard.edu/plink...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:22, 6 December 2019
Description
PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing and genotyping projects, particularly whole-exome and whole-genome studies. It is independent of (but designed to be complementary to) the existing PLINK package.
Environment Modules
Run module spider plinkseq to find out what environment modules are available for this application.
System Variables
- HPC_PLINKSEQ_DIR - installation directory
- HPC_PLINKSEQ_BIN - executable directory