Difference between revisions of "Plink"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
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=Validation=
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* Validated 4/5/2018

Latest revision as of 21:23, 6 December 2019

Description

plink website  

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.

Required Modules

Serial

  • plink

System Variables

  • HPC_PLINK_DIR - installation directory
  • HPC_PLINK_BIN - executable directory





Validation

  • Validated 4/5/2018