Difference between revisions of "Pbsmrtpipe"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pbsmrtpipe}} |{{#vardefine:url|http://pbsmrtpipe.readthedocs.org/en/master/index.h...")
 
 
(3 intermediate revisions by 2 users not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Biology]]
+
[[Category:Software]][[Category:Biology]][[Category:Programming]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|pbsmrtpipe}}
 
|{{#vardefine:app|pbsmrtpipe}}
Line 21: Line 21:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 18:05, 15 August 2022

Description

pbsmrtpipe website  

Workflow Engine for working with PacBio data.

Environment Modules

Run module spider pbsmrtpipe to find out what environment modules are available for this application.

System Variables

  • HPC_PBSMRTPIPE_DIR - installation directory