Difference between revisions of "Pbalign"

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(Created page with "Category:SoftwareCategory:biologyCategory:bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pbalign}} |{{#vardefine:url|https://github.com/PacificB...")
 
m (Text replacement - "#uppercase" to "uc")
 
Line 24: Line 24:
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:22, 6 December 2019

Description

pbalign website  

pbalign maps PacBio reads to reference sequences.

Environment Modules

Run module spider pbalign to find out what environment modules are available for this application.

System Variables

  • HPC_PBALIGN_DIR - installation directory
  • HPC_PBALIGN_BIN - executable directory