PILON

Description

pilon website  

Pilon is a software tool which can be used to:

• Automatically improve draft assemblies
• Find variation among strains, including large event detection

Environment Modules

Run module spider pilon to find out what environment modules are available for this application.

System Variables

• HPC_{{#uppercase:pilon}}_DIR - installation directory
• HPC_{{#uppercase:pilon}}_BIN - executable directory
• HPC_{{#uppercase:pilon}}_DOC - documentation directory

Citation

If you publish research that uses pilon you have to cite it as follows:

Bruce J. Walker, Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar, Christina A. Cuomo, Qiandong Zeng, Jennifer Wortman, Sarah K. Young, Ashlee M. Earl (2014) Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement. PLoS ONE 9(11): e112963. doi:10.1371/journal.pone.0112963