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phyldog website  

Phyldog is a program made to simultaneously build gene and species trees when gene families have undergone duplications and losses. It can analyze thousands of gene families in dozens of genomes simultaneously. Trees and parameters are estimated in the maximum likelihood framework, by maximizing the probability of alignments given the species tree, the gene trees and the parameters of duplication and loss.

Required Modules

Parallel (MPI)

  • openmpi
  • phyldog


System Variables

  • HPC_{{#uppercase:phyldog}}_DIR