Difference between revisions of "PHYLDOG"

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[[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]]
 
[[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]]
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[[Category:AlexReview]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|phyldog}}
 
|{{#vardefine:app|phyldog}}

Revision as of 17:43, 5 April 2018

Description

phyldog website  

Phyldog is a program made to simultaneously build gene and species trees when gene families have undergone duplications and losses. It can analyze thousands of gene families in dozens of genomes simultaneously. Trees and parameters are estimated in the maximum likelihood framework, by maximizing the probability of alignments given the species tree, the gene trees and the parameters of duplication and loss.

Required Modules

Parallel (MPI)

  • openmpi
  • phyldog

System Variables

  • HPC_{{#uppercase:phyldog}}_DIR