Revision as of 13:27, 29 August 2014 by Gepard (talk | contribs) (Created page with "Category:SoftwareCategory:BiologyCategory:Bioinfomatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|PBJelly}} |{{#vardefine:url|http://sourceforge.net/proje...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search


PBJelly website  

PBJelly is a highly automated pipeline that aligns long sequencing reads (such a PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly's workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes.

Required Modules


  • PBJelly

System Variables

  • HPC_{{#uppercase:PBJelly}}_DIR
  • HPC_{{#uppercase:PBJelly}}_BIN
  • HPC_{{#uppercase:PBJelly}}_CONF
  • HPC_{{#uppercase:PBJelly}}_TEST