PBJelly
Revision as of 21:22, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
PBJelly is a highly automated pipeline that aligns long sequencing reads (such a PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly's workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes.
Required Modules
Serial
- PBJelly
System Variables
- HPC_PBJELLY_DIR
- HPC_PBJELLY_BIN
- HPC_PBJELLY_CONF
- HPC_PBJELLY_TEST
Additional Information
This module includes the full PBSuite.
Validation
- Validate 4/5/2018