PBJelly
Jump to navigation
Jump to search
Description
PBJelly is a highly automated pipeline that aligns long sequencing reads (such a PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly's workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes.
Required Modules
Serial
- PBJelly
System Variables
- HPC_{{#uppercase:PBJelly}}_DIR
- HPC_{{#uppercase:PBJelly}}_BIN
- HPC_{{#uppercase:PBJelly}}_CONF
- HPC_{{#uppercase:PBJelly}}_TEST