P53MH
Jump to navigation
Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
Description
Computes a score between 0 and 100 for each site in the DNA sequence of a gene. A high score indicates an increased probability that n nucleotides at that and subsequent sites represent a p53 binding site, where n = 2 x 10 + (selected length of spacer region).
Environment Modules
Run module spider p53mh
to find out what environment modules are available for this application.
System Variables
- HPC_P53MH_DIR - installation directory
- HPC_P53MH_BIN - executable directory
- HPC_P53MH_DAT - example data directory
Additional Information
p53MH requires a data file. You can copy the example data file to your current working directory with the follow command:
ml p53mh cp $HPC_P53MH_DAT/* .
Citation
If you publish research that uses p53mh you have to cite it as follows: