Difference between revisions of "OrthoFinder"

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==Required Modules==
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==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
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===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
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* openmpi
 
* {{#var:app}}
 
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==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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=Validation=
 
* Validated 4/5/2018
 

Revision as of 20:11, 10 June 2022

Description

orthofinder website  

OrthoFinder is a program for identifying orthologous protein sequence families. It is written in python and runs as a single command that takes as input a directory of FASTA files, one per species. It outputs a file containing the orthologous groups of genes from these species.

Environment Modules

Run module spider orthofinder to find out what environment modules are available for this application.

System Variables

  • HPC_ORTHOFINDER_DIR - installation directory