Difference between revisions of "OptiType"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - test directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_CONF - config directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 16:37, 10 June 2022
Description
OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
Environment Modules
Run module spider optitype to find out what environment modules are available for this application.
System Variables
- HPC_OPTITYPE_DIR - installation directory
- HPC_OPTITYPE_BIN - executable directory
- HPC_OPTITYPE_EXE - test directory
- HPC_OPTITYPE_DOC - documentation directory
- HPC_OPTITYPE_CONF - config directory