Difference between revisions of "Olego"
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Moskalenko (talk | contribs) (Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|olego}} |{{#vardefine:url|http://zhanglab.c2b2.columbia.edu/index.php/OLego_Documentation}} <!--CONFIG...") |
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Revision as of 16:35, 29 October 2013
Description
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seed-and-extend scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by strategic searches with very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. OLego supports multi-threading to allow for fast processing of large-scale data.
Required Modules
Serial
- olego
System Variables
- HPC_{{#uppercase:olego}}_DIR