Difference between revisions of "Oases"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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*{{#var:app}} | *{{#var:app}} | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_OASES_BIN | * HPC_OASES_BIN | ||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
Revision as of 21:22, 6 December 2019
Description
Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. It was developed by Marcel Schulz (MPI for Molecular Genomics) and Daniel Zerbino (previously at the European Bioinformatics Institute (EMBL-EBI), now at UC Santa Cruz).
Required Modules
Serial
- oases
System Variables
- HPC_OASES_DIR - installation directory
- HPC_OASES_BIN
Validation
- Validated 4/5/2018