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ococo website  

OCOCO: the first online consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

Environment Modules

Run module spider ococo to find out what environment modules are available for this application.

System Variables

  • HPC_OCOCO_DIR - installation directory
  • HPC_OCOCO_BIN - executable directory
  • HPC_OCOCO_SCP - scripts directory
  • HPC_OCOCO_EXE - exampledirectory


If you publish research that uses ococo you have to cite it as follows:

K. Brinda, V. Boeva, G. Kucherov. Ococo: an online consensus caller. arXiv:1712.01146 [q-bio.GN, 2017]