NucleoATAC

From UFRC
Revision as of 21:22, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

nucleoatac website  

Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).

Environment Modules

Run module spider nucleoatac to find out what environment modules are available for this application.

System Variables

  • HPC_NUCLEOATAC_DIR - installation directory
  • HPC_NUCLEOATAC_BIN - executable directory




Citation

If you publish research that uses nucleoatac you have to cite it as follows:

Schep, Alicia N., et al. "Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions." Genome research 25.11 (2015): 1757-1770.