NucleoATAC

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Description

nucleoatac website  

Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).

Environment Modules

Run module spider nucleoatac to find out what environment modules are available for this application.

System Variables

  • HPC_{{#uppercase:nucleoatac}}_DIR - installation directory
  • HPC_{{#uppercase:nucleoatac}}_BIN - executable directory




Citation

If you publish research that uses nucleoatac you have to cite it as follows:

Schep, Alicia N., et al. "Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions." Genome research 25.11 (2015): 1757-1770.