Difference between revisions of "NucDiff"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|nucdiff}} |{{#vardefine:url|https://github.com/uio-cels/NucDiff}} <!--CONFIG...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| (One intermediate revision by one other user not shown) | |||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:22, 6 December 2019
Description
NucDiff locates and categorizes differences between two closely related nucleotide sequences. It is able to deal with very fragmented genomes, structural rearrangements and various local differences. These features make NucDiff to be perfectly suitable to compare assemblies with each other or with available reference genomes.
Environment Modules
Run module spider nucdiff to find out what environment modules are available for this application.
System Variables
- HPC_NUCDIFF_DIR - installation directory
- HPC_NUCDIFF_BIN - executable directory
- HPC_NUCDIFF_DOC - documentation directory
Citation
If you publish research that uses nucdiff you have to cite it as follows: