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nubeamdedup website  

nubeam-dedup is a fast and easy-to-use bioinformatics tool removing exact PCR duplicates for sequencing reads, single-end or paired-end. We appreciate your interest in nubeam-dedup.

Environment Modules

Run module spider nubeamdedup to find out what environment modules are available for this application.

System Variables

  • HPC_NUBEAMDEDUP_DIR - installation directory
  • HPC_NUBEAMDEDUP_BIN - executable directory


If you publish research that uses nubeamdedup you have to cite it as follows:

Hang Dai and Yongtao Guan, Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping.