Difference between revisions of "Novoalign"
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Revision as of 17:48, 5 April 2018
Description
Novoalign is a highly accurate program for mapping next-generation sequencing reads to a reference database. It is an aligner for single-ended and paired-end reads from the Illumina Genome Analyser. Novoalign finds global optimum alignments using full Needleman-Wunsch algorithm with affine gap penalties.
Limited functionality and single-threaded performance are available without a paid license. Novoalign must only be used for academic/non-profit research and the results of the analyses must published in peer-reviewed journals as requested by the software manufacturer in Novoalign FAQ.
Required Modules
Serial
- novoalign
Note: Multiple software packages are made available via the novoalign module: novocraft (Novoalign), novoalignCS, novomethyl, and novosort.
Parallel (MPI)
- intel
- openmpi
- novoalign
Note: Multiple software packages are made available via the novoalign module: novoalignMPI and novoalignCSMPI.
System Variables
- HPC_{{#uppercase:novoalign}}_DIR - installation directory
- HPC_NOVOALIGN_BIN - executable directory
- HPC_NOVOALIGN_DOC - documentation directory
Validation
- Validated 4/5/2018