Difference between revisions of "Ngmlr"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ngmlr}} |{{#vardefine:url|https://github.com/philres/ngm...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 35: | Line 35: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:22, 6 December 2019
Description
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Required Modules
Serial
- ngmlr
System Variables
- HPC_NGMLR_DIR - installation directory
- HPC_NGMLR_BIN - executable directory
Citation
If you publish research that uses ngmlr you have to cite it as follows:
Accurate detection of complex structural variations using single molecule sequencing