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nf-core website  

A community effort to collect a curated set of analysis pipelines built using Nextflow and tools to run the pipelines.

The nf-core collection includes portable, documented and easy to use workflows, pipelines that you can trust.

See Nat Biotechnol 38, 276–278 (2020) for nf-core publication.

Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages.

Its fluent DSL simplifies the implementation and the deployment of complex parallel and reactive workflows on clouds and clusters.

Note: Docker is not usable on HPC clusters, so use -with-singularity, environment modules, or conda for running NextFlow pipelines.

Environment Modules

Run module spider nf-core to find out what environment modules are available for this application.

System Variables

  • HPC_NF-CORE_DIR - installation directory