Difference between revisions of "Newbler"

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m (Text replace - "Usage policy" to "Usage Policy")
m (Text replace - "{{#if: {{#var: mod}}|==Execution Environment and Modules== {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}" to "==Required Modules== modules documentation ===Serial=== *{{#var:app}}")
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<!--Modules-->
 
<!--Modules-->
{{#if: {{#var: mod}}|==Execution Environment and Modules==
+
==Required Modules==
{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}
+
[[Modules|modules documentation]]
 +
===Serial===
 +
*{{#var:app}}
 
<!--Add additional HPC_FOO_BIN and other ENV VARIABLES below-->
 
<!--Add additional HPC_FOO_BIN and other ENV VARIABLES below-->
 
* HPC_NEWBLER_BIN - executable directory
 
* HPC_NEWBLER_BIN - executable directory

Revision as of 16:55, 10 August 2012

Description

newbler website  

Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life Sciences, a Roche Diagnostics company.

Required Modules

modules documentation

Serial

  • newbler
  • HPC_NEWBLER_BIN - executable directory