Difference between revisions of "NeEstimator"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 18:44, 10 June 2022
Description
NeEstimator is a tool for estimating contemporary effective population size (Ne) using multi-locus diploid genotypes from population samples.
Environment Modules
Run module spider neestimator to find out what environment modules are available for this application.
System Variables
- HPC_NEESTIMATOR_DIR - installation directory
Additional Information
This software is inside of the container.
Usage example:
Ne2L
If you are using GUI part of the software:
ml gui launch_gui_session --module neestimator -e NeEstimator
Connect with xpra locally using the xpra command
xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713
Citation
If you publish research that uses neestimator you have to cite it as follows:
“We estimated Ne using the molecular co-ancestry method of Nomura (2008), as implemented in NeEstimator V2.01 (Do et al. In Press.).”