NanoCount
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Description
[/apps/nanocount/0.2.1/bin nanocount website]
NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Environment Modules
Run module spider nanocount
to find out what environment modules are available for this application.
System Variables
- HPC_NANOCOUNT_DIR - installation directory
- HPC_NANOCOUNT_BIN - executable directory