Difference between revisions of "NPhase"
Jump to navigation
Jump to search
| Line 2: | Line 2: | ||
[[Category:Biology]] | [[Category:Biology]] | ||
[[Category:Pipeline]] | [[Category:Pipeline]] | ||
| − | |||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|nphase}} | |{{#vardefine:app|nphase}} | ||
Latest revision as of 17:53, 15 August 2022
Description
nPhase is a ploidy agnostic tool developed in python which predicts the haplotypes of a sample that was sequenced by both long and short reads by aligning them to a reference. It should work with any ploidy
Environment Modules
Run module spider nphase to find out what environment modules are available for this application.
System Variables
- HPC_NPHASE_DIR - installation directory
- HPC_NPHASE_BIN - executable directory