Difference between revisions of "NPhase"

From UFRC
Jump to navigation Jump to search
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Software]]
 
[[Category:Software]]
[[Category:Bioinformatics]]
+
[[Category:Biology]]
 
[[Category:Pipeline]]
 
[[Category:Pipeline]]
[[Category:Phasing]]
 
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|nphase}}
 
|{{#vardefine:app|nphase}}

Latest revision as of 17:53, 15 August 2022

Description

nphase website  

nPhase is a ploidy agnostic tool developed in python which predicts the haplotypes of a sample that was sequenced by both long and short reads by aligning them to a reference. It should work with any ploidy


Environment Modules

Run module spider nphase to find out what environment modules are available for this application.

System Variables

  • HPC_NPHASE_DIR - installation directory
  • HPC_NPHASE_BIN - executable directory