Difference between revisions of "NPhase"

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[[Category:Software]]
 
[[Category:Software]]
[[Category:Bioinformatics]]
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[[Category:Biology]]
 
[[Category:Pipeline]]
 
[[Category:Pipeline]]
 
[[Category:Phasing]]
 
[[Category:Phasing]]

Revision as of 20:07, 12 August 2022

Description

nphase website  

nPhase is a ploidy agnostic tool developed in python which predicts the haplotypes of a sample that was sequenced by both long and short reads by aligning them to a reference. It should work with any ploidy


Environment Modules

Run module spider nphase to find out what environment modules are available for this application.

System Variables

  • HPC_NPHASE_DIR - installation directory
  • HPC_NPHASE_BIN - executable directory