Difference between revisions of "NMRPipe"

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(Created page with "Category:SoftwareCategory:Biochemistry[[Category:]] {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|NMRPipe}} |{{#vardefine:url|http://spin.niddk.nih.gov/NMRPipe/}}...")
 
 
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[[Category:Software]][[Category:Biochemistry]][[Category:]]
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[[Category:Software]][[Category:Biology]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|NMRPipe}}
 
|{{#vardefine:app|NMRPipe}}
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|{{#vardefine:testing|}} <!--TESTING/PROFILING-->
 
|{{#vardefine:testing|}} <!--TESTING/PROFILING-->
 
|{{#vardefine:faq|}} <!--FAQ-->
 
|{{#vardefine:faq|}} <!--FAQ-->
|{{#vardefine:citation|}} <!--CITATION-->
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|{{#vardefine:citation|1}} <!--CITATION-->
 
|{{#vardefine:installation|}} <!--INSTALLATION-->
 
|{{#vardefine:installation|}} <!--INSTALLATION-->
 
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
 
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
  
Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life Sciences, a Roche Diagnostics company.
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NMRPipe is an extensive software system for processing, analyzing, and exploiting NMR spectroscopic data. An NMRPipe installation also provides the applications NMRDraw, NMRWish, TALOS+, SPARTA+, DYNAMO, DC, MFR, ACME, and others.  
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
[[Modules|modules documentation]]
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_NEWBLER_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_LIB - library directory
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<!--Run-->
 
<!--Run-->
 
{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
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{{#if: {{#var: citation}}|==Citation==
 
{{#if: {{#var: citation}}|==Citation==
 
If you publish research that uses {{#var:app}} you have to cite it as follows:
 
If you publish research that uses {{#var:app}} you have to cite it as follows:
DOUBLE_CLICK_TO_WRITE_CITATION_HERE
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F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax: NMRPipe: a multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR. 6, 277-293 (1995).
 
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|}}
 
<!--Installation-->
 
<!--Installation-->

Latest revision as of 15:55, 23 August 2022

Description

NMRPipe website  

NMRPipe is an extensive software system for processing, analyzing, and exploiting NMR spectroscopic data. An NMRPipe installation also provides the applications NMRDraw, NMRWish, TALOS+, SPARTA+, DYNAMO, DC, MFR, ACME, and others.

Environment Modules

Run module spider NMRPipe to find out what environment modules are available for this application.

System Variables

  • HPC_NMRPIPE_DIR - installation directory
  • HPC_NMRPIPE_BIN - executable directory
  • HPC_NMRPIPE_LIB - library directory




Citation

If you publish research that uses NMRPipe you have to cite it as follows:

F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax: NMRPipe: a multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR. 6, 277-293 (1995).