Mosaik
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Description
MOSAIK is a reference-guided assembler comprising of four main modular programs:
- MosaikBuild
- MosaikAligner
- MosaikSort
- MosaikText
MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikText converts alignments to different text-based formats.
At this time, the workflow consists of supplying sequences in FASTA, FASTQ, Illumina Bustard & Gerald, or SRF file formats and producing results in the BLAT axt, the BAM/SAM, the UCSC Genome Browser bed, or the Illumina ELAND formats.
Required Modules
Serial
- mosaik
- HPC_MOSAIK_BIN - executable file directory