MONI index uses the prefix-free parsing of the text  to build the Burrows-Wheeler Transform (BWT) of the reference genomes, the suffix array (SA) samples at the beginning and at the end of each run of the BWT, and the threshold positions of .
module spider Moni to find out what environment modules are available for this application.
- HPC_MONI_DIR - installation directory
- HPC_MONI_BIN - executable directory
If you publish research that uses Moni you have to cite it as follows:
 Hideo Bannai, Travis Gagie, and Tomohiro I, "Refining ther-index", Theoretical Computer Science, 812 (2020), pp. 96–108
 Christina Boucher, Travis Gagie, Alan Kuhnle and Giovanni Manzini, "Prefix-Free Parsing for Building Big BWTs", In Proc. of the 18th International Workshop on Algorithms in Bioinformatics (WABI 2018).
 Christina Boucher, Travis Gagie, Alan Kuhnle, Ben Langmead, Giovanni Manzini, and Taher Mun. "Prefix-free parsing for building big BWTs.", Algorithms for Molecular Biology 14, no. 1 (2019): 13.