Difference between revisions of "Metaxa2"

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==System Variables==
 
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* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
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Revision as of 21:21, 6 December 2019

Description

metaxa2 website  

Metaxa2 is a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.

Required Modules

Serial

  • metaxa2

System Variables

  • HPC_METAXA2_DIR - installation directory




Citation

If you publish research that uses metaxa2 you have to cite it as follows:

Bengtsson-Palme J, Hartmann M, Eriksson KM, Pal C, Thorell K, Larsson DGJ, Nilsson RH: Metaxa2: Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data. Molecular Ecology Resources (2015). doi: 10.1111/1755-0998.12399


Validation

  • Validate 4/5/2018