Difference between revisions of "Metaxa2"

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If you publish research that uses {{#var:app}} you have to cite it as follows:
 
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[http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12399/abstract Bengtsson-Palme J, Hartmann M, Eriksson KM, Pal C, Thorell K, Larsson DGJ, Nilsson RH: Metaxa2: Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data. Molecular Ecology Resources (2015). doi: 10.1111/1755-0998.12399]
 
 
 
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Revision as of 15:38, 16 July 2015

Description

Metaxa2 website  

Metaxa2 is a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.

Required Modules

Serial

  • Metaxa2

System Variables

  • HPC_{{#uppercase:Metaxa2}}_DIR - installation directory




Citation

If you publish research that uses Metaxa2 you have to cite it as follows:

Bengtsson-Palme J, Hartmann M, Eriksson KM, Pal C, Thorell K, Larsson DGJ, Nilsson RH: Metaxa2: Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data. Molecular Ecology Resources (2015). doi: 10.1111/1755-0998.12399