This software enables the prediction of metabolic and biogeochemical functional trait profiles to any given genome datasets.
module spider metabolic to find out what environment modules are available for this application.
- HPC_METABOLIC_DIR - installation directory
- HPC_METABOLIC_BIN - executable directory
- GTDBTK_DATA_PATH - reference database directory
- HPC_METABOLIC_REF - reference database directory
If you publish research that uses metabolic you have to cite it as follows:
[Zhichao Zhou, Patricia Q. Tran, Adam M. Breister, Yang Liu, Kristopher Kieft, Elise S. Cowley, Ulas Karaoz, Karthik Anantharaman."METABOLIC: High-throughput profiling of microbial genomes for functional traits, biogeochemistry, and community-scale metabolic networks" bioRxiv 761643 https://doi.org/10.1101/761643]