Difference between revisions of "Metabolic"
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|{{#vardefine:app|metabolic}} | |{{#vardefine:app|metabolic}} | ||
Latest revision as of 19:26, 18 August 2022
Description
This software enables the prediction of metabolic and biogeochemical functional trait profiles to any given genome datasets.
Environment Modules
Run module spider metabolic to find out what environment modules are available for this application.
System Variables
- HPC_METABOLIC_DIR - installation directory
- HPC_METABOLIC_BIN - executable directory
- GTDBTK_DATA_PATH - reference database directory
- HPC_METABOLIC_REF - reference database directory
Usage Example
$ METABOLIC-C.pl -help
$ METABOLIC-G.pl -help
Citation
If you publish research that uses metabolic you have to cite it as follows:
[Zhichao Zhou, Patricia Q. Tran, Adam M. Breister, Yang Liu, Kristopher Kieft, Elise S. Cowley, Ulas Karaoz, Karthik Anantharaman."METABOLIC: High-throughput profiling of microbial genomes for functional traits, biogeochemistry, and community-scale metabolic networks" bioRxiv 761643 https://doi.org/10.1101/761643]