Difference between revisions of "MetaPhlAn2"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_UTI - utils directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - example directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:21, 6 December 2019
Description
MetaPhlAn2 is a tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.
Environment Modules
Run module spider metaphlan2 to find out what environment modules are available for this application.
System Variables
- HPC_METAPHLAN2_DIR - installation directory
- HPC_METAPHLAN2_BIN - executable directory
- HPC_METAPHLAN2_DOC - documentation directory
- HPC_METAPHLAN2_UTI - utils directory
- HPC_METAPHLAN2_EXE - example directory