Difference between revisions of "MetaCluster"

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__NOTOC__
 
__NOTOC__
 
__NOEDITSECTION__
 
__NOEDITSECTION__
[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
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[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 
{|<!--Main settings - REQUIRED-->
 
{|<!--Main settings - REQUIRED-->
 
|{{#vardefine:app|metacluster}}
 
|{{#vardefine:app|metacluster}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
[[Modules|modules documentation]]
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory.
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory.
 
<!--Additional-->
 
<!--Additional-->
 
{{#if: {{#var: exe}}|==Additional Information==
 
{{#if: {{#var: exe}}|==Additional Information==
Two programs are available - htseq-count and htseq-qa. Run them without any arguments to see the usage information. The main HTSeq module can be loaded from python (import HTSeq). See HTSeq documentation for a tutorial.
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Four programs are available  
|}}
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* MetaBinNoise 
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* MetaCluster4Fast 
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* MetaCluster5_1 
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* MetaCluster5_2|}}
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
 
See the [[{{PAGENAME}}_Configuration]] page for {{#var: app}} configuration details.|}}
 
See the [[{{PAGENAME}}_Configuration]] page for {{#var: app}} configuration details.|}}

Latest revision as of 19:26, 18 August 2022

Description

metacluster website  
MetaCluster is an unsupervised binning method for metagenomic sequences. Existing binning methods based on sequence similarity and sequence composition markers rely heavily on the reference genomes of known microorganisms and phylogenetic markers. MetaCluster is an integrated binning method based on the unsupervised top-down separation and bottom-up merging strategy. It can bin metagenomic sequencing datasets with mixed complex species abundance ratios from the exactly equal situation to the extremely unbalance situation with consistently high accuracy.

Environment Modules

Run module spider metacluster to find out what environment modules are available for this application.

System Variables

  • HPC_METACLUSTER_DIR - installation directory
  • HPC_METACLUSTER_BIN - executable directory.

Additional Information

Four programs are available

  • MetaBinNoise
  • MetaCluster4Fast
  • MetaCluster5_1
  • MetaCluster5_2