Difference between revisions of "MetaCV"

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<!--Modules-->
 
<!--Modules-->
 
==Required Modules==
 
==Required Modules==
 +
[[Modules|modules documentation]]
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* intel/2013
 
* intel/2013
 
* metacv
 
* metacv

Revision as of 18:01, 12 August 2014

Description

metacv website  

MetaCV is a composition and phylogeny-based algorithm to classify very short metagenomic reads (75-100 bp) into specific taxonomic and functional groups. It performs (for both sensitivity and specificity) as good as BlastX-based methods on simulated short reads, but runs 300 times faster, thus provides fast and accurate analysis on huge amount of NGS data.

Required Modules

modules documentation

  • intel/2013
  • metacv

System Variables

  • HPC_{{#uppercase:metacv}}_DIR
  • HPC_{{#uppercase:metacv}}_BIN
  • HPC_{{#uppercase:metacv}}_DB