Difference between revisions of "MetaCV"

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m (Prescott moved page Metacv to MetaCV)
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* HPC_{{#uppercase:{{#var:app}}}}_BIN
 
* HPC_{{#uppercase:{{#var:app}}}}_BIN
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* HPC_{{#uppercase:{{#var:app}}}}_DB
 
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Revision as of 18:00, 12 August 2014

Description

metacv website  

MetaCV is a composition and phylogeny-based algorithm to classify very short metagenomic reads (75-100 bp) into specific taxonomic and functional groups. It performs (for both sensitivity and specificity) as good as BlastX-based methods on simulated short reads, but runs 300 times faster, thus provides fast and accurate analysis on huge amount of NGS data.

Required Modules

  • intel/2013
  • metacv

System Variables

  • HPC_{{#uppercase:metacv}}_DIR
  • HPC_{{#uppercase:metacv}}_BIN
  • HPC_{{#uppercase:metacv}}_DB