Difference between revisions of "MetaCV"

From UFRC
Jump to navigation Jump to search
Line 36: Line 36:
 
==System Variables==
 
==System Variables==
 
* HPC_{{#uppercase:{{#var:app}}}}_DIR
 
* HPC_{{#uppercase:{{#var:app}}}}_DIR
 +
* HPC_{{#uppercase:{{#var:app}}}}_BIN
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Revision as of 15:37, 12 August 2014

Description

metacv website  

MetaCV is a composition and phylogeny-based algorithm to classify very short metagenomic reads (75-100 bp) into specific taxonomic and functional groups. It performs (for both sensitivity and specificity) as good as BlastX-based methods on simulated short reads, but runs 300 times faster, thus provides fast and accurate analysis on huge amount of NGS data.

Required Modules

  • intel/2013
  • metacv

System Variables

  • HPC_{{#uppercase:metacv}}_DIR
  • HPC_{{#uppercase:metacv}}_BIN