Difference between revisions of "MetaCV"
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| − | + | MetaCV is a composition and phylogeny-based algorithm to classify very short metagenomic reads (75-100 bp) into specific taxonomic and functional groups. It performs (for both sensitivity and specificity) as good as BlastX-based methods on simulated short reads, but runs 300 times faster, thus provides fast and accurate analysis on huge amount of NGS data. | |
<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
Revision as of 15:36, 12 August 2014
Description
MetaCV is a composition and phylogeny-based algorithm to classify very short metagenomic reads (75-100 bp) into specific taxonomic and functional groups. It performs (for both sensitivity and specificity) as good as BlastX-based methods on simulated short reads, but runs 300 times faster, thus provides fast and accurate analysis on huge amount of NGS data.
Required Modules
- intel/2013
- metacv
System Variables
- HPC_{{#uppercase:metacv}}_DIR
