Difference between revisions of "MetaCV"

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DESCRIPTION
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MetaCV is a composition and phylogeny-based algorithm to classify very short metagenomic reads (75-100 bp) into specific taxonomic and functional groups. It performs (for both sensitivity and specificity) as good as BlastX-based methods on simulated short reads, but runs 300 times faster, thus provides fast and accurate analysis on huge amount of NGS data.
 
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==Required Modules==
 
==Required Modules==

Revision as of 15:36, 12 August 2014

Description

metacv website  

MetaCV is a composition and phylogeny-based algorithm to classify very short metagenomic reads (75-100 bp) into specific taxonomic and functional groups. It performs (for both sensitivity and specificity) as good as BlastX-based methods on simulated short reads, but runs 300 times faster, thus provides fast and accurate analysis on huge amount of NGS data.

Required Modules

  • intel/2013
  • metacv

System Variables

  • HPC_{{#uppercase:metacv}}_DIR