Difference between revisions of "Merlin"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:SNP {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|merlin}} |{{#vardefine:url|http://csg.sph.umich.edu/abecasis/Merli...")
 
 
(3 intermediate revisions by 3 users not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Biology]][[Category:SNP]]
+
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|merlin}}
 
|{{#vardefine:app|merlin}}
Line 21: Line 21:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 12:56, 15 August 2022

Description

merlin website  

MERLIN uses sparse trees to represent gene flow in pedigrees.

Environment Modules

Run module spider merlin to find out what environment modules are available for this application.

System Variables

  • HPC_MERLIN_DIR - installation directory




Citation

If you publish research that uses merlin you have to cite it as follows:

Abecasis GR, Cherny SS, Cookson WO and Cardon LR (2002). Merlin-rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet 30:97-101.