Difference between revisions of "Megraft"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
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{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:22, 6 December 2019

Description

megraft website  

A software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes

Required Modules

Serial

  • megraft

System Variables

  • HPC_MEGRAFT_DIR - installation directory




Citation

If you publish research that uses megraft you have to cite it as follows:

Johan Bengtsson, Martin Hartmann, Martin Unterseher, Parag Vaishampayan, Kessy Abarenkov, Lisa Durso, Elisabeth M. Bik, James R. Garey, K. Martin Eriksson, R. Henrik Nilsson Published in Research in Microbiology. Volume 163, Issues 6–7 (2012), 407–412 doi: 10.1016/j.resmic.2012.07.001.


Validation

  • Validate 4/5/2018