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medaka website  

medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods, whilst being much faster.

Environment Modules

Run module spider medaka to find out what environment modules are available for this application.

System Variables

  • HPC_MEDAKA_DIR - installation directory
  • HPC_MEDAKA_BIN - executable directory